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torsdag 11 maj 2023

Arylsulfataasien(ARS) aktivaatiojärjestelmästä

 Aktivaatiossa vaikuttaa NAD/NADH, sekä usea SUMF tekijä, jossa  ryhmä SUMF1 ja SUMF2 lisäksi vuorovaikuttavat säädellen  ARS mahdollista aktivaatiota. Jos SUMF2 ja SUMF1 ryhmät liittyvät toisiinsa estyy ARS aktaativaatio             jolloin nähdään: NADH +(H2S) ja  aktiivi ARS.

 

 https://reactome.org/PathwayBrowser/#/R-HSA-163841&SEL=R-HSA-1614336&PATH=R-HSA-392499,R-HSA-597592



Lysosomaalisten sulfataasien kasvava perhe (2020)

 

. 2020 Oct 30;477(20):3963-3983.
doi: 10.1042/BCJ20200586. Lysosomal sulfatases: a growing family
AffiliationsPMID: 33120425 DOI: 10.1042/BCJ20200586
Abstract
Sulfatases constitute a family of enzymes that specifically act in the hydrolytic degradation of sulfated metabolites by removing sulfate monoesters from various substrates, particularly glycolipids and glycosaminoglycans. A common essential feature of all known eukaryotic sulfatases is the posttranslational modification (PTM) of a critical cysteine residue in their active site by oxidation to formylglycine (FGly), which is mediated by the FGly-generating enzyme in the endoplasmic reticulum and is indispensable for catalytic activity.
 The majority of the so far described sulfatases localize intracellularly to lysosomes, where they act in different catabolic pathways. Mutations in genes coding for lysosomal sulfatases lead to an accumulation of the sulfated substrates in lysosomes, resulting in impaired cellular function and multisystemic disorders presenting as lysosomal storage diseases, which also cover the mucopolysaccharidoses and metachromatic leukodystrophy. Bioinformatics analysis of the eukaryotic genomes revealed, besides the well described and long known disease-associated sulfatases, additional genes coding for putative enzymes with sulfatases activity, including arylsulfatase G as well as the arylsulfatases H, I, J and K, respectively. In this article, we review current knowledge about lysosomal sulfatases with a special focus on the just recently characterized family members arylsulfatase G and arylsulfatase K.Keywords: formyl glycine-generating enzyme; glycosaminoglycans; lysosomal storage disease; lysosomes; mucopolysaccharidosis; sulfatase. © 2020 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society. 


 (Omaa tekstiäni 11.5. 2023:   Arylsulfataasien (ARS)  osalta löytää lisätietoja reaktomilinkistä, joka on  erikseen seuraavassa otsikossa.  Tiesin arylsulfataaseista  aikanaan sen, että niissä on K1-vitamiinista  riippuvia rakenteita  joukossa. Nyt kun etsin GeneCard tietoja  arylsulfataaseista ARS huomaan, että muutama niistä inhiboituu warfariinilla, ainakin yksi niistä:  ARSE. Olen vielä etsimässä  sitä PTM modifikaatiota. Niitä etsiessä löysin reaktomitaulukon,  josta   ARS-entsyymien  aktivaatio kuvataan  kaavamaisesti  erittelemättä eri ARS tyyppejä tässä yleiskuvassa. Mainitaan jopa erään sars-Cov-2  proteiininkin  päässeen SUMF2-ryppään vaikuttajajoukkoon,  nim Orf3A.  Sars-Cov-2 teki hyvin erikoisen alkutempun. Se sujuttautui jollain tavalla   lysosomien suuntaan ja autofagosomiin päin johtavalle tielle, mutta  tie jähmettyi eikä  johtanut virusta lysosomaaliseen hajoitukseen,  vaan itse asiassa virus sai turvallisen kaksoiskalvoiseen sytoplasmiseen   linnoituksen, jossa se  pääsi toteutumaan  kalvorakennelmien suojaamana). 

 Näitä ARS on paljon ja aakkosia riittää. en ole vielä koonnut koko luetteloa.


Lysosomin sulfataaseista haku.

Lysosomal sulfatases: a growing family.
Lübke T, Damme M. Biochem J. 2020 Oct 30;477(20):3963-3983. doi: 10.1042/BCJ20200586. PMID: 33120425 Review.
The majority of the so far described sulfatases localize intracellularly to lysosomes, where they act in different catabolic pathways. Mutations in genes coding for lysosomal sulfatases lead to an accumulation of the sulfated substrates in lysosomes
Brain delivery and activity of a lysosomal enzyme using a blood-brain barrier transport vehicle in mice.
Ullman JC, Arguello A, Getz JA, Bhalla A, Mahon CS, Wang J, Giese T, Bedard C, Kim DJ, Blumenfeld JR, Liang N, Ravi R, Nugent AA, Davis SS, Ha C, Duque J, Tran HL, Wells RC, Lianoglou S, Daryani VM, Kwan W, Solanoy H, Nguyen H, Earr T, Dugas JC, Tuck MD, Harvey JL, Reyzer ML, Caprioli RM, Hall S, Poda S, Sanchez PE, Dennis MS, Gunasekaran K, Srivastava A, Sandmann T, Henne KR, Thorne RG, Di Paolo G, Astarita G, Diaz D, Silverman AP, Watts RJ, Sweeney ZK, Kariolis MS, Henry AG. Sci Transl Med. 2020 May 27;12(545):eaay1163. doi: 10.1126/scitranslmed.aay1163. PMID: 32461331
Most lysosomal storage diseases (LSDs) involve progressive central nervous system (CNS) impairment, resulting from deficiency of a lysosomal enzyme. ...We demonstrate that ETV fusions containing iduronate 2-sulfatase (ETV:IDS), the lysosomal enzyme def …
Molecular architecture determines brain delivery of a transferrin receptor-targeted lysosomal enzyme.
Arguello A, Mahon CS, Calvert MEK, Chan D, Dugas JC, Pizzo ME, Thomsen ER, Chau R, Damo LA, Duque J, Fang M, Giese T, Kim DJ, Liang N, Nguyen HN, Solanoy H, Tsogtbaatar B, Ullman JC, Wang J, Dennis MS, Diaz D, Gunasekaran K, Henne KR, Lewcock JW, Sanchez PE, Troyer MD, Harris JM, Scearce-Levie K, Shan L, Watts RJ, Thorne RG, Henry AG, Kariolis MS. J Exp Med. 2022 Mar 7;219(3):e20211057. doi: 10.1084/jem.20211057. Epub 2022 Feb 28. PMID: 35226042 Free PMC article.
Here, we characterized the pharmacological behavior of two distinct TfR-targeted platforms fused to iduronate 2-sulfatase (IDS), a lysosomal enzyme deficient in mucopolysaccharidosis type II (MPS II), and compared the relative brain exposures and functional activiti …
Mammalian Sulfatases: Biochemistry, Disease Manifestation, and Therapy.
Mashima R, Nakanishi M. Int J Mol Sci. 2022 Jul 24;23(15):8153. doi: 10.3390/ijms23158153. PMID: 35897729 Free PMC article. Review.
They are commonly activated by the unusual amino acid formylglycine, which is formed from cysteine at the catalytic center, mediated by a formylglycine-generating enzyme as a post-translational modification. Sulfatases are expressed in various cellular compartments such as …
Sulfatases and human disease.
Diez-Roux G, Ballabio A. Annu Rev Genomics Hum Genet. 2005;6:355-79. doi: 10.1146/annurev.genom.6.080604.162334. PMID: 16124866 Review.
The importance of sulfatases in human metabolism is underscored by the presence of at least eight human monogenic diseases caused by the deficiency of individual sulfatases. Sulfatase activity requires a unique posttranslational modification, which is impaire …
Sulfatases: structure, mechanism, biological activity, inhibition, and synthetic utility.
Hanson SR, Best MD, Wong CH. Angew Chem Int Ed Engl. 2004 Nov 5;43(43):5736-63. doi: 10.1002/anie.200300632. PMID: 15493058 Review.
These findings have increased interest in sulfatases and in targeting them for therapeutic endeavors. Although numerous sulfatases have been identified, the wide scope of their biological activity is only beginning to emerge. Herein, accounts of the diversity and gr …
A novel protein modification generating an aldehyde group in sulfatases: its role in catalysis and disease.
von Figura K, Schmidt B, Selmer T, Dierks T. Bioessays. 1998 Jun;20(6):505-10. doi: 10.1002/(SICI)1521-1878(199806)20:6<505::AID-BIES9>3.0.CO;2-K. PMID: 9699462 Review.
In multiple sulfatase deficiency, a rare human lysosomal storage disorder, all known sulfatases are synthesized as catalytically poorly active polypeptides. ...Analysis of one of these prokaryotic sulfatases, however, revealed the presence of the C alp …
Arylsulfatase K, a novel lysosomal sulfatase.
Wiegmann EM, Westendorf E, Kalus I, Pringle TH, Lübke T, Dierks T. J Biol Chem. 2013 Oct 18;288(42):30019-30028. doi: 10.1074/jbc.M113.499541. Epub 2013 Aug 28. PMID: 23986440 Free PMC article.
A novel member of this family, arylsulfatase K (ARSK), was identified bioinformatically through its conserved sulfatase signature sequence directing posttranslational generation of the catalytic formylglycine residue in sulfatases. ...ARSK mRNA expression was found …
Lysosomal degradation of heparin and heparan sulphate.
Freeman C, Hopwood J. Adv Exp Med Biol. 1992;313:121-34. doi: 10.1007/978-1-4899-2444-5_13. PMID: 1442257 Review. No abstract available.

 

Synukleiinit mainitaan päivän Ruotsinsuomalaisessa lehdessä. Synukleinopatia antaa oireena Parkinsonin taudille tyypillisiä oireita

 Siteeraan  artikkelin, joka kertoo suomalaisesta tutkimuksesta neurotieteiden alalla. Aikoinaan professori Urpo Rinne  luennoi 1965 neuroanatomiaa meidän medisiinarikurssillemme  ja hänen  henkilökohtainen tieteellinen kiinnostuksensa kohdistui Parkinsonin taudin selvittelyyn. RS- lehti kertoo  hankinnaisen PD-taudin ( siis ei geneettisen)  etiologioassa voivan olla erästä bakteerilajia, desulfovibriota, ja lysosomaalisen alfasynukleiinin aggrekoitumista  Professori Per Saris Helsingin yliopistosta johtaa  tutkijaryhmää.

https://www.malacards.org/card/parkinson_disease_1_autosomal_dominant

Diseases in the Parkinson Disease, Late-Onset family:

Parkinson Disease 1, Autosomal Dominant Parkinson Disease 15, Autosomal Recessive Early-Onset
Parkinson Disease 12 Parkinson Disease 2, Autosomal Recessive Juvenile
Parkinson Disease 3, Autosomal Dominant Parkinson Disease 4, Autosomal Dominant
Parkinson Disease 6, Autosomal Recessive Early-Onset Parkinson Disease 7, Autosomal Recessive Early-Onset
Parkinson Disease 10 Parkinson Disease 8, Autosomal Dominant
Parkinson Disease 11, Autosomal Dominant Parkinson Disease 13, Autosomal Dominant
Parkinson Disease 14, Autosomal Recessive Parkinson Disease 16
Parkinson Disease 5, Autosomal Dominant Parkinson Disease 17
Parkinson Disease 18, Autosomal Dominant Parkinson Disease 19a, Juvenile-Onset
Parkinson Disease 20, Early-Onset Parkinson Disease 21
Parkinson Disease 22, Autosomal Dominant Parkinson Disease 23, Autosomal Recessive Early-Onset
Parkinson Disease 24, Autosomal Dominant Juvenile-Onset Parkinson's Disease
Early-Onset Parkinson's Disease Vps35-Related Parkinson Disease
Hereditary Late-Onset Parkinson Disease

Diseases related to Parkinson Disease, Late-Onset via text searches within MalaCards or GeneCards Suite gene sharing:

(show top 50) (show all 1880)

Summaries:

MedlinePlus: 41 Parkinson's disease (PD) is a type of movement disorder. It happens when nerve cells in the brain don't produce enough of a brain chemical called dopamine. Sometimes it is genetic, but most cases do not seem to run in families. Exposure to chemicals in the environment might play a role. Symptoms begin gradually, often on one side of the body. Later they affect both sides. They include: Trembling of hands, arms, legs, jaw and face Stiffness of the arms, legs and trunk Slowness of movement Poor balance and coordination As symptoms get worse, people with the disease may have trouble walking, talking, or doing simple tasks. They may also have problems such as depression, sleep problems, or trouble chewing, swallowing, or speaking. There is no specific test for PD, so it can be difficult to diagnose. Doctors use a medical history and a neurological examination to diagnose it. PD usually begins around age 60, but it can start earlier. It is more common in men than in women. There is no cure for PD. A variety of medicines sometimes help symptoms dramatically. Surgery and deep brain stimulation (DBS) can help severe cases. With DBS, electrodes are surgically implanted in the brain. They send electrical pulses to stimulate the parts of the brain that control movement. NIH: National Institute of Neurological Disorders and Stroke

MalaCards based summary: Parkinson Disease, Late-Onset, also known as parkinson disease, is related to hereditary late-onset parkinson disease and parkinson disease 3, autosomal dominant, and has symptoms including tremor, constipation and myoclonus. An important gene associated with Parkinson Disease, Late-Onset is MAPT (Microtubule Associated Protein Tau), and among its related pathways/superpathways are Parkinson's disease pathway and Degradation pathway of sphingolipids, including diseases. The drugs Idebenone and Tadalafil have been mentioned in the context of this disorder. Affiliated tissues include Brain and subthalamic nucleus, and related phenotypes are hallucinations and abnormal autonomic nervous system physiology

MedlinePlus Genetics: 42 Parkinson disease is a progressive disorder of the nervous system. The disorder affects several regions of the brain, especially an area called the substantia nigra that controls balance and movement.Often the first symptom of Parkinson disease is trembling or shaking (tremor) of a limb, especially when the body is at rest. Typically, the tremor begins on one side of the body, usually in one hand. Tremors can also affect the arms, legs, feet, and face. Other characteristic symptoms of Parkinson disease include rigidity or stiffness of the limbs and torso, slow movement (bradykinesia) or an inability to move (akinesia), and impaired balance and coordination (postural instability). These symptoms worsen slowly over time.Parkinson disease can also affect emotions and thinking ability (cognition). Some affected individuals develop psychiatric conditions such as depression and visual hallucinations. People with Parkinson disease also have an increased risk of developing dementia, which is a decline in intellectual functions including judgment and memory.Generally, Parkinson disease that begins after age 50 is called late-onset disease. The condition is described as early-onset disease if signs and symptoms begin before age 50. Early-onset cases that begin before age 20 are sometimes referred to as juvenile-onset Parkinson disease.

UniProtKB/Swiss-Prot: 73 A complex neurodegenerative disorder characterized by bradykinesia, resting tremor, muscular rigidity and postural instability. Additional features are characteristic postural abnormalities, dysautonomia, dystonic cramps, and dementia. The pathology of Parkinson disease involves the loss of dopaminergic neurons in the substantia nigra and the presence of Lewy bodies (intraneuronal accumulations of aggregated proteins), in surviving neurons in various areas of the brain. The disease is progressive and usually manifests after the age of 50 years, although early-onset cases (before 50 years) are known. The majority of the cases are sporadic suggesting a multifactorial etiology based on environmental and genetic factors. However, some patients present with a positive family history for the disease. Familial forms of the disease usually begin at earlier ages and are associated with atypical clinical features.

PubMed Health : 63 Parkinson's: Parkinson's is a disease of the nervous system that mostly affects older people. It typically begins after the age of 50. The disease can be very hard to live with because it severely restricts mobility and as a result makes daily activities increasingly difficult. Parkinson's is a progressive disease, which means that in most cases it will continue to gradually get worse. Many people who develop Parkinson’s will require nursing care. There is no cure for the disease and its exact cause is not known, but there are effective treatments that can relieve the symptoms.

NINDS: 52 Parkinson's disease (PD) is movement disorder of the nervous system that gets worse over time. As nerve cells (neurons) in parts of the brain weaken, are damaged, or die, people may begin to notice problems with movement, tremor, stiffness in the limbs or the trunk of the body, or impaired balance. As symptoms progress, people may have difficulty walking, talking, or completing other simple tasks. Not everyone with one or more of these symptoms has PD, as the symptoms appear in other diseases as well.

OMIM®: 57 Parkinson disease was first described by James Parkinson in 1817. It is the second most common neurodegenerative disorder after Alzheimer disease (AD; 104300), affecting approximately 1% of the population over age 50 (Polymeropoulos et al., 1996). (168600) (Updated 26-Feb-2023)

Disease Ontology 11 Late onset parkinson's disease: A Parkinson's disease characterized by onset of motor symptoms typically after 60 years of age.

Parkinson's disease: A synucleinopathy that has material basis in degeneration of the central nervous system that often impairs motor skills, speech, and other functions.

Wikipedia: 75 Parkinson's disease (PD), or simply Parkinson's, is a long-term degenerative disorder of the central... more...

Katse lysosomiin( 2) Neuronikalvon uudismuodostus tarvitsee esteröitymätötä kolesterolia. Kolesterolien modifioinnista.

J Neurosci. 2011 Jun 22;31(25):9404-13. Unesterified cholesterol accumulation in late endosomes/lysosomes causes neurodegeneration and is prevented by driving cholesterol export from this compartment.

Department of Pediatrics, The University of Texas Southwestern Medical School, Dallas, Texas 75390, USA. Abstract

While unesterified cholesterol (C) is essential for remodeling neuronal plasma membranes, its role in certain neurodegenerative disorders remains poorly defined. Uptake of sterol from pericellular fluid requires processing that involves two lysosomal proteins, lysosomal acid lipase, which hydrolyzes C esters, and NPC1 (Niemann-Pick type C1). In systemic tissues, inactivation of either protein led to sterol accumulation and cell death, but in the brain, inactivation of only NPC1 caused C sequestration and neurodegeneration. When injected into the CNS of the npc1(-/-) mouse, 2-hydroxypropyl-β-cyclodextrin (HP-β-CD), a compound known to prevent this C accumulation, diffused throughout the brain and was excreted with a t(½) of 6.5 h. This agent caused suppression of C synthesis, elevation of C esters, suppression of sterol regulatory-binding protein 2 (SREBP2) target genes, and activation of liver X receptor-controlled genes. These findings indicated that HP-β-CD promoted movement of the sequestered C from lysosomes to the metabolically active pool of C in the cytosolic compartment of cells in the CNS. The ED(50) for this agent in the brain was ∼0.5 mg/kg, and the therapeutic effect lasted >7 d. Continuous infusion of HP-β-CD into the ventricular system of npc1(-/-) animals between 3 and 7 weeks of age normalized the biochemical abnormalities and completely prevented the expected neurodegeneration. These studies support the concept that neurons continuously acquire C from interstitial fluid to permit plasma membrane turnover and remodeling. Inactivation of NPC1 leads to lysosomal C sequestration and neurodegeneration, but this is prevented by the continuous, direct administration of HP-β-CD into the CNS.

PMID:
21697390
[PubMed - indexed for MEDLINE]

PMCID: PMC3134878
[Available on 2011/12/22]

måndag 1 maj 2023

gp uutisessa mainitaan AD tautia estävästä lääkeaineesta, joka on IgG1 monoklonaaninen vasta-aine

 

A randomized, double-blind, phase 2b proof-of-concept clinical trial in early Alzheimer's disease with lecanemab, an anti-Aβ protofibril antibody.
Swanson CJ, Zhang Y, Dhadda S, Wang J, Kaplow J, Lai RYK, Lannfelt L, Bradley H, Rabe M, Koyama A, Reyderman L, Berry DA, Berry S, Gordon R, Kramer LD, Cummings JL. Alzheimers Res Ther. 2021 Apr 17;13(1):80. doi: 10.1186/s13195-021-00813-8. PMID: 33865446 Free PMC article. Clinical Trial.
BACKGROUND: Lecanemab (BAN2401), an IgG1 monoclonal antibody, preferentially targets soluble aggregated amyloid beta (Abeta), with activity across oligomers, protofibrils, and insoluble fibrils. ...CSF biomarkers were supportive of a treatment effect. Lecanemab was …
Lecanemab in Early Alzheimer's Disease.
van Dyck CH, Swanson CJ, Aisen P, Bateman RJ, Chen C, Gee M, Kanekiyo M, Li D, Reyderman L, Cohen S, Froelich L, Katayama S, Sabbagh M, Vellas B, Watson D, Dhadda S, Irizarry M, Kramer LD, Iwatsubo T. N Engl J Med. 2023 Jan 5;388(1):9-21. doi: 10.1056/NEJMoa2212948. Epub 2022 Nov 29. PMID: 36449413 Clinical Trial.
Participants were randomly assigned in a 1:1 ratio to receive intravenous lecanemab (10 mg per kilogram of body weight every 2 weeks) or placebo. ...Lecanemab resulted in infusion-related reactions in 26.4% of the participants and amyloid-related imaging abnormaliti …
Lecanemab: First Approval.
Hoy SM. Drugs. 2023 Mar;83(4):359-365. doi: 10.1007/s40265-023-01851-2. PMID: 36856953 Review.
Lecanemab (lecanemab-irmb; LEQEMBI) is a humanized immunoglobulin gamma 1 (IgG1) against aggregated soluble and insoluble forms of amyloid-beta peptide. ...This article summarizes the milestones in the development of lecanemab leading to this first approval f
Lecanemab in patients with early Alzheimer's disease: detailed results on biomarker, cognitive, and clinical effects from the randomized and open-label extension of the phase 2 proof-of-concept study.
McDade E, Cummings JL, Dhadda S, Swanson CJ, Reyderman L, Kanekiyo M, Koyama A, Irizarry M, Kramer LD, Bateman RJ. Alzheimers Res Ther. 2022 Dec 21;14(1):191. doi: 10.1186/s13195-022-01124-2. PMID: 36544184 Free PMC article. Clinical Trial.
The objective of this analysis is to report results from study 201 blinded period (core), the open-label extension (OLE), and gap period (between core and OLE) supporting the effectiveness of lecanemab. METHODS: The lecanemab study 201 core was a double-blind, rando …
Impact of Anti-amyloid-β Monoclonal Antibodies on the Pathology and Clinical Profile of Alzheimer's Disease: A Focus on Aducanumab and Lecanemab.
Shi M, Chu F, Zhu F, Zhu J. Front Aging Neurosci. 2022 Apr 12;14:870517. doi: 10.3389/fnagi.2022.870517. eCollection 2022. PMID: 35493943 Free PMC article. Review.
., aducanumab, bapineuzumab, gantenerumab, solanezumab, and lecanemab) have been developed successively and conducted in clinical trials based on the theory that a systemic failure of cell-mediated Abeta clearance contributes to AD occurrence and progression. ...Specifical …https://www.frontiersin.org/files/Articles/870517/fnagi-14-870517-HTML/image_m/fnagi-14-870517-t001.jpg 
 
 https://www.frontiersin.org/files/Articles/870517/fnagi-14-870517-HTML/image_m/fnagi-14-870517-t001.jpg
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Long-Term Health Outcomes of Lecanemab in Patients with Early Alzheimer's Disease Using Simulation Modeling.
Tahami Monfared AA, Tafazzoli A, Ye W, Chavan A, Zhang Q. Neurol Ther. 2022 Jun;11(2):863-880. doi: 10.1007/s40120-022-00350-y. Epub 2022 Apr 25. PMID: 35469060 Free PMC article.
The mean time to mild, moderate, and severe AD dementia was longer for patients in the lecanemab + SoC group than for patients in the SoC group by 2.51, 3.13, and 2.34 years, respectively. ...The model also predicted a lower lifetime probability of admission to institution …
Lecanemab, Aducanumab, and Gantenerumab - Binding Profiles to Different Forms of Amyloid-Beta Might Explain Efficacy and Side Effects in Clinical Trials for Alzheimer's Disease.
Söderberg L, Johannesson M, Nygren P, Laudon H, Eriksson F, Osswald G, Möller C, Lannfelt L. Neurotherapeutics. 2023 Jan;20(1):195-206. doi: 10.1007/s13311-022-01308-6. Epub 2022 Oct 17. PMID: 36253511 Free PMC article.
All three antibodies bound monomers with low affinity. However, lecanemab and aducanumab had very weak binding to monomers, and gantenerumab somewhat stronger binding. Lecanemab was distinctive as it had tenfold stronger binding to protofibrils compared to fibrils. …
Lecanemab slows Alzheimer's disease: hope and challenges.
Mead S, Fox NC. Lancet Neurol. 2023 Feb;22(2):106-108. doi: 10.1016/S1474-4422(22)00529-4. PMID: 36681438 No abstract available.