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torsdag 28 maj 2020

Tähän blogiin liitän geenin ZGRF1 , noin 15- 16 GRF sekvenssimotiivia ainakin

What's a GeneRIF?
sä isoformissa on yksi qpqp jakso ja ppp ja qpq , joitain pp ja qq ja qp.
  1. NM_001350397.1NP_001337326.1  protein ZGRF1 isoform 2
    Status: REVIEWED
    Source sequence(s)
    AC023886, AC106864
    Conserved Domains (4) summary
    pfam06839
    Location:12891333
    zf-GRF; GRF zinc finger
    pfam10382
    Location:473
    DUF2439; Protein of unknown function (DUF2439)
    pfam13087
    Location:17971981
    AAA_12; AAA domain
    cl26261
    Location:15912003
    AAA_11; AAA domain

ORIGIN      
        1 mesqefivly thqkmkkskv wqdgilkith lgnkailydd kgacleslfl kclevkpgdd
       61 lesdrylitv eevkvagaig ivkqnvnkea pelnsrtfis sgrslgcqps glkrkftgfq
      121 gprqvpkkmv imesgesaas heakktgpti fspfcsmppl fptvgkkdvn niladpeniv
      181 tyknrernam dfssvfspsf qinpevlcee nyfcspvnsg nklsdslltn epvkrdslas
      241 hysgvsqnir skaqilallk sessssceel nsemtehfpq kqpqgslkia tkpkyliqqe
      301 ecaemksten lyyqhqsent mrnksrwamy lssqsspihs stvdgndter kpkaqeddvn
      361 snlkdlslqk iiqfvetyae erkkynvdqs vgnndpswnq evkleipsfn essslqvtcs
      421 saendgilse sdiqednkip fnqndkgcik gsvlikenaq evntcgtlek eyeqsesslp
      481 elkhlqiess nnsrisddit dmiseskmdn eslnsihesl snvtqpflev tfnlnnfets
      541 dteeesqesn kisqdseswv kdilvndgns cfqkrsentn ceeiegehlp fltsvsdkpt
      601 vtfpvketlp sqfcdktyvg fdmgickten tgkeieeysd tlsnfesfkw tdavygdnke
      661 dankpiqevr inydfalppn kskginmnlh iphiqnqiae nsnlfsedaq pqpfilgsdl
      721 dkndehvlps tsssdnsvql lntnqnhyec ialdksnthi snslfyplgk khliskdtea
      781 hisepedlgk irspppdhve vetaregkqy wnprnssels glvntisilk slcehstald
      841 sleilkkknt vfqqgtqqty epdsppevrk pfitvvspks phlhkdsqqi lkedevelse
      901 plqsvqfsss gskeetafqa vipkqierkt cdpkvtspee nistlspvst fslnsrdedf
      961 mvefsetslk artlpddlhf lnlegmkksr slenenlqrl sllsrtqvpl itlprtdgpp
     1021 dldshsymin sntyessgsp mlnlceksav lsfsiepedq netffseesr evnpgdvsln
     1081 nistqskwlk yqntsqcnva tpnrvdkrit dgffaeavsg mhfrdtserq sdavnessld
     1141 svhlqmikgm lyqqrqdfss qdsvsrkkvl slnlkqtskt eeiknvlggs tcynysvkdl
     1201 qeisgselcf psgqkiksay lpqrqihipa vfqspahykq tftscliehl nillfglaqn
     1261 lqkalskvdi sfytslkgek lknaennvps chhsqpaklv mvkkegpnkg rlfytcdgpk
     1321 adrckffkwl edvtpgystq egarpgmvls diksiglylr sqkiplyeec qllvrkgfdf
     1381 qrkqygklkk fttvnpefyn epktklylkl srkerssays kndlwvvskt ldfeldtfia
     1441 csaffgpssi neieilplkg yfpsnwptnm vvhallvcna stelttlkni qdyfnpatlp
     1501 ltqyllttss ptivsnkrvs krkfippaft nvstkfells lgatlklase liqvhklnkd
     1561 qataliqiaq mmashesiee vkelqthtfp itiihgvfga gksyllavvi lffvqlfeks
     1621 eaptignarp wkllissstn vavdrvllgl lslgfenfir vgsvrkiakp ilpyslhags
     1681 eneseqlkel halmkedltp tervyvrksi eqhklgtnrt llkqvrvvgv tcaacpfpcm
     1741 ndlkfpvvvl decsqitepa sllpiarfec eklilvgdpk qlpptiqgsd aahengleqt
     1801 lfdrlclmgh kpillrtqyr chpaisaian dlfykgalmn gvteierspl lewlptlcfy
     1861 nvkgleqier dnsfhnvaea tftlkliqsl iasgiagsmi gvitlyksqm yklchllsav
     1921 dfhhpdiktv qvstvdafqg aekeiiilsc vrtrqvgfid sekrmnvalt rgkrhllivg
     1981 nlaclrknql wgrviqhceg redglqhanq yepqlnhllk dyfekqveek qkkksekeks
     2041 kdkshs
//
 
 Katson isomeerin 1  q ja p esiintymät. 
Paljon on leusiinia, lysiiniä ja seriiniäkin. On G-R-F sekvenssit 
isolla kirjaimella 
 ORIGIN      
        1 mesqefivly thqkmkkskv wqdGilkith lgnkailydd kgacleslfl kclevkpgdd
       61 lesdRylitv eevkvagaig ivkqnvnkea pelnsrtFis sGRslgcqps glkrkfFtGfq
      121 gpRqvpkkmv imesgesaas heakktgpti Fspfcsmppl fptvGkkdvn niladpeniv
      181 tyknRernam dFssvfspsf qinpevlcee nyfcspvnsG nklsdslltn epvkRdslas
      241 hysgvsqnir skaqilallk sessssceel nsemtehFpq kqpqGslkia tkpkyliqqe
      301 ecaemksten lyyqhqsent mRnksrwamy lssqsspihs stvdgndter kpkaqeddvn
      361 snlkdlslqk iiqFvetyae erkkynvdqs vGnndpswnq evkleipsfn essslqvtcs
      421 saendgilse sdiqednkip fnqndkgcik gsvlikenaq evntcgtlek eyeqsesslp
      481 elkhlqiess nnsRisddit dmiseskmdn eslnsihesl snvtqpFlev tfnlnnfets
      541 dteeesqesn kisqdseswv kdilvndGns cfqkRsentn ceeiegehlp Fltsvsdkpt
      601 vtfpvketlp sqfcdktyvG fdmgickten tgkeieeysd tlsnfesfkw tdavygdnke
      661 dankpiqevR inydFalppn kskGinmnlh iphiqnqiae nsnlfsedaq pqpfilgsdl
      721 dkndehvlps tsssdnsvql lntnqnhyec ialdksnthi snslfyplgk khliskdtea
      781 hisepedlgk irspppdhve vetaRegkqy wnprnssels glvntisilk slcehstald
      841 sleilkkknt vFqqGtqqty epdsppevRk pFitvvspks phlhkdsqqi lkedevelse
      901 plqsvqfsss Gskeetafqa vipkqieRkt cdpkpveFqG hqvkgsatsg vmvRghssql
      961 gcsqFpdste yenfmtetpe lpstcmqidf lqvtspeeni stlspvstfs lnsrdedfmv
     1021 efsetslkar tlpddlhfln leGmkksRsl enenlqrlsl lsrtqvplit lprtdgppdl
     1081 dshsyminsn tyessgspml nlceksavls Fsiepedqne tffseesrev npGdvslnni
     1141 stqskwlkyq ntsqcnvatp nRvdkritdg FfaeavsGmh fRdtserqsd avnessldsv
     1201 hlqmikgmly qqrqdFssqd svsrkkvlsl nlkqtsktee iknvlGgstc ynysvkdlqe
     1261 isgselcfps gqkiksaylp qRqihipavf qspahykqtF tscliehlni llfGlaqnlq
     1321 kalskvdisf ytslkgeklk naennvpsch hsqpaklvmv kkegpnkgRl FytcdGpkad
     1381 RckFfkwled vtpGystqeg aRpgmvlsdi ksiglylrsq kiplyeecql lvrkgFdfqr
     1441 kqyGklkkft tvnpefynep ktklylklsR kerssayskn dlwvvsktld Feldtfiacs
     1501 affGpssine ieilplkgyf psnwptnmvv hallvcnast elttlkniqd yfnpatlplt
     1561 qyllttsspt ivsnkRvskr kFippaftnv stkfellslG atlklaseli qvhklnkdqa
     1621 taliqiaqmm ashesieevk elqthtfpit iihgvfgagk syllavvilf fvqlfeksea
     1681 ptignaRpwk llissstnva vdrvllglls lgFenfirvG svRkiakpil pyslhagsen
     1741 eseqlkelha lmkedltpte rvyvrksieq hklgtnrtll kqvrvvgvtc aacpFpcmnd
     1801 lkfpvvvlde csqitepasl lpiarfecek lilvGdpkql pptiqgsdaa hengleqtlf
     1861 dRlclmghkp illrtqyrch paisaiandl FykgalmnGv teieRsplle wlptlcFynv
     1921 kGleqieRdn sFhnvaeatf tlkliqslia sGiagsmigv itlyksqmyk lchllsavdf
     1981 hhpdiktvqv stvdafqgae keiiilscvR trqvgFidse krmnvaltrG kRhllivgnl
     2041 aclrknqlwg rviqhcegre dglqhanqye pqlnhllkdy fekqveekqk kksekekskd
     2101 kshs
//